Markdown to Epub questions

[nqk]

I have a number of markdown documents, the codes are quite stadardized. All seems to work fine. But I have a few questions

All the footnotes are as follows:

Here's a simple footnote,[^note] and here's a longer one.[^anote]

[^note]: This is the first footnote.

[^anote]: Here's one with multiple paragraphs and code.

All these notes are converted to a list (1, 2, 3.) but

1) They are appended to the last html file. Can can it be a separate file?
I used this to break the files which work with h2. //*[name()='h2' or div[@class="footnote"]].

2) I inserted ".footnote ol {padding: 0;}" to the "Look and Feel" before converting, but this has no effect.

3) Can they be formated in epub3 (epub:type...)

PS: I do all this on the Content Server.