I just tested this on my Paperwhite 2 and had no problems with highlighting Hebrew words.
Most likely there's a problem with the encoding of the original Hebrew text and/or the azw3 conversion.
Try to highlight words in my test file. If it works, there's something wrong with your file or, if you used Calibre to generate your azw3 file, maybe it's a Calibre bug. (I used Kindle Previewer/KindleGen to create my test file.)
Did the words that you tried to highlight end in one of the 5 Hebrew letters that have a special final form, e.g. ץ?
If so, maybe the word contained an invisible Unicode character before the last letter.
Last edited by Doitsu; 07-06-2016 at 03:48 PM.
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