I'm not sure, but I don't think that your display-options.xml file needs to be included in the manifest within the opf file because it is part of the META-INF directory. Remember, the directory the opf file is in is considered the 'root' of the manifest's file system.
And it looks like (in the manifest section of the opf) the item hrefs for the fonts have left out the Fonts in the path. That would clear up both the other two errors. they should look like <item href="Fonts/GentiumPlus..." ...can't remember how to declare font files here />
Hope this helps a little.
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