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If the book had columns, or pictures inset into the page you want to particularly be watching for sentences which start in one column and end with the text from another. You will have to locate the missing chucks, probably later in the text and reunite them with the text by referring to your book or pdf.
Letter substitutions happen all the time. R becomes E, etc.
Footnotes which may be a good idea in a printed book are much less so in an epub...endnotes at the end of each chapter are better because they are quicker to reach in the same section. This may occasion renumbering as well as links to them and back from them.
Footnotes also, if they continue from one page to another in the same footnote, the second section can end up as nonsense text in the middle of the body of the text.
Even after you think you are done, save the thing and put it into your device and read it again, although probably you will be sick of it by then and you will find yet more errors.
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