Thanks for the info, eschwartz! I have tried it and apparently it works (syncing annotations between different PCs with BF Reader by copying/pasting .annot files). I might stick to manual syncing though. I´m a bit afraid that something could go wrong.
Anyway, I´m still looking for a better solution to sync annotations across platforms. So, if anybody has a good idea, please post it. I actually also thought about getting a little Windows tablet as ereader allowing me to sync to my Windows desktop. But that´s also not really an attractive solution...
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