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Answering my own problem:
The second problem (error when using "Export all notes in your library") was related to the language of the "My Clippings.txt" file.
I had to change the clip.lua to take into account that the note type and the dates were in Portuguese instead of English.
I am not an expert in lua, so I don't know how I could make it more general to different languages.
It is working fine now.
On the other hand, "Export all notes in this book" is still only creating empty notes on Evernote, I still couldn't fix it.
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