You can download the books from the B&N website (My NOOK). Then import those files into Calibre (if you have not done so already). Once you have imported the book into Calibre, you may want to "archive" your books on the B&N website. Otherwise, you will have 2 copies of the same B&N book on your Nook--one from the B&N server and one from Calibre.
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