I have attached the word file (as a zip since it was too large) I am trying to convert together with the output epub file.
Spoiler:
Convert book 1 of 1 (The Decipherment of Minoan Linear A, Volume I, Part I: Hurrians and Hurrian in Minoan Crete: Text, Bibliography, Maps, Appendices)
Conversion options changed from defaults:
cover: 'C:\\Users\\RICARD~1.NET\\AppData\\Local\\Temp\\ca libre_davltk4n\\awdlis2l.jpeg'
read_metadata_from_opf: 'C:\\Users\\RICARD~1.NET\\AppData\\Local\\Temp\\ca libre_davltk4n\\7tymr8yq.opf'
verbose: 2
output_profile: 'generic_eink'
Resolved conversion options
calibre version: 6.7.1
{'asciiize': False,
'author_sort': None,
'authors': None,
'base_font_size': 0.0,
'book_producer': None,
'change_justification': 'original',
'chapter': "//*[((name()='h1' or name()='h2') and re:test(., "
"'\\s*((chapter|book|section|part)\\s+)|((prolog|p rologue|epilogue)(\\s+|$))', "
"'i')) or @class = 'chapter']",
'chapter_mark': 'pagebreak',
'comments': None,
'cover': 'C:\\Users\\RICARD~1.NET\\AppData\\Local\\Temp\\ca libre_davltk4n\\awdlis2l.jpeg',
'debug_pipeline': None,
'dehyphenate': True,
'delete_blank_paragraphs': True,
'disable_font_rescaling': False,
'docx_inline_subsup': False,
'docx_no_cover': False,
'docx_no_pagebreaks_between_notes': False,
'dont_split_on_page_breaks': False,
'duplicate_links_in_toc': False,
'embed_all_fonts': False,
'embed_font_family': None,
'enable_heuristics': False,
'epub_flatten': False,
'epub_inline_toc': False,
'epub_toc_at_end': False,
'epub_version': '2',
'expand_css': False,
'extra_css': None,
'extract_to': None,
'filter_css': '',
'fix_indents': True,
'flow_size': 260,
'font_size_mapping': None,
'format_scene_breaks': True,
'html_unwrap_factor': 0.4,
'input_encoding': None,
'input_profile': <calibre.customize.profiles.InputProfile object at 0x0000015CD2EC6EF0>,
'insert_blank_line': False,
'insert_blank_line_size': 0.5,
'insert_metadata': False,
'isbn': None,
'italicize_common_cases': True,
'keep_ligatures': False,
'language': None,
'level1_toc': None,
'level2_toc': None,
'level3_toc': None,
'line_height': 0.0,
'linearize_tables': False,
'margin_bottom': 5.0,
'margin_left': 5.0,
'margin_right': 5.0,
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'markup_chapter_headings': True,
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'no_inline_navbars': False,
'no_svg_cover': False,
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'page_breaks_before': '/',
'prefer_metadata_cover': False,
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'pretty_print': True,
'pubdate': None,
'publisher': None,
'rating': None,
'read_metadata_from_opf': 'C:\\Users\\RICARD~1.NET\\AppData\\Local\\Temp\\ca libre_davltk4n\\7tymr8yq.opf',
'remove_fake_margins': True,
'remove_first_image': False,
'remove_paragraph_spacing': False,
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'renumber_headings': True,
'replace_scene_breaks': '',
'search_replace': '[]',
'series': None,
'series_index': None,
'smarten_punctuation': False,
'sr1_replace': None,
'sr1_search': None,
'sr2_replace': None,
'sr2_search': None,
'sr3_replace': None,
'sr3_search': None,
'start_reading_at': None,
'subset_embedded_fonts': False,
'tags': None,
'timestamp': None,
'title': None,
'title_sort': None,
'toc_filter': None,
'toc_threshold': 6,
'toc_title': None,
'transform_css_rules': '[]',
'transform_html_rules': '[]',
'unsmarten_punctuation': False,
'unwrap_lines': True,
'use_auto_toc': False,
'verbose': 2}
InputFormatPlugin: DOCX Input running
on C:\Users\RICARD~1.NET\AppData\Local\Temp\calibre_d avltk4n\dgxzul2p.docx
Encountered unknown field: , ignoring it.
Converting Word markup to HTML
Converting styles to CSS
Cleaning up redundant markup generated by Word
Found Word Table of Contents, using it to generate the Table of Contents
Parsing all content...
Parsing docx.css ...
Parsing index.html ...
Initial parse failed, using more forgiving parsers
Parsing index.html as HTML
Referenced file 'file%3a///%5c%5clinear' not found
Reading TOC from NCX...
Merging user specified metadata...
Detecting structure...
Detected chapter: CHAPTER 1: LINEAR A AND RELATED SCRIPTS
Detected chapter: CHAPTER 2: CLASSIFICATION OF LINEAR A SIGNS AND IN
Detected chapter: CHAPTER 3: SCRIPT AND LANGUAGE
Detected chapter: CHAPTER 4: A SYSTEMATIC APPROACH TO LINEAR A
Detected chapter: CHAPTER 5: A ‘LINGUISTIC’ ANALYSIS OF LINEAR A
Detected chapter: CHAPTER 6: THE HURRIAN LANGUAGE AS A LIKELY CANDID
Detected chapter: CHAPTER 7: THE HURRIAN LANGUAGE AS A LIKELY CANDID
Detected chapter: CHAPTER 8: THE HURRIAN LANGUAGE AS A LIKELY CANDID
Detected chapter: CHAPTER 9: HURRIAN GRAMMAR (according to I. Wegner
Detected chapter: CHAPTER 10: LINEAR A INSCRIPTIONS ON METAL OBJECTS
Detected chapter: CHAPTER 11: ‘RELIGIOUS’ LINEAR A INSCRIPTIONS
Detected chapter: CHAPTER 12: FROM UNDECIPHERED TO DECIPHERED LINEAR
Flattening CSS and remapping font sizes...
Source base font size is 12.00000pt
Removing fake margins...
Found 8388 items of level: p_1
Found 17 items of level: div_1
Found 87 items of level: p_5
Found 23 items of level: p_3
Ignoring level p_3
p_1 left margin stats: Counter({'0': 8388})
p_1 right margin stats: Counter({'0': 8388})
div_1 left margin stats: Counter()
div_1 right margin stats: Counter()
p_5 left margin stats: Counter({'0': 87})
p_5 right margin stats: Counter({'0': 86, '-6.25pt': 1})
Cleaning up manifest...
Trimming unused files from manifest...
Creating EPUB Output...
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Rescaling image from 1317x1671 to 566x719 images/Linear_A__after_Carratelli____cognates_H_and_B.jpe g
Rescaling image from 1249x1416 to 566x643 images/Linear_A__signes_du_quatrieme_groupe.jpeg
Rescaling image from 1321x1430 to 566x613 images/Maps_of_Crete__West_and_East__grey.jpeg
Rescaling image from 1243x1659 to 563x751 images/The_Linear_B_syllabary.jpeg
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EPUB output written to C:\Users\RICARD~1.NET\AppData\Local\Temp\calibre_d avltk4n\rj979eao.epub