I am having problem dealing with superscript (footnote references) in files.
Here is the original pdf, that has reference 60 in the second paragraph:
https://dl.dropbox.com/u/4047484/superscript-input.pdf
And here is the output file with pretty much default options used:
https://dl.dropbox.com/u/4047484/superscript-output.pdf
As you can see, the superscript causes two lines not to be treated as separate lines of text...
Is there a way to deal with this problem?