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Phil:
htmldoc has a bug with TOCs. I think if the TOC is too big it crashes. You can try reduce the number of TOC levels (specified in the htmldoc options).
Fritz:
Are you using htmldoc or the built in PDF generator? The built-in one does not strip <script> tags which may be the problem. This is fixed in release 20 which I will probably release earlier than planned with a few features cut; watch this space.
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