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What is it that you actually want to achieve?
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I want to make sure that the books that I have:
good directory tree for Calibre.
is not a duplicate of another book. ( This does do not include other formats. For example, if I have a book called The Best Book in the World, in pdf and epub those two are in the proper folder for Calibre. )
No empty listings in Calibre
Overall, I just want to organize them. Make sure the books have a nice tidy place to live. Then remove the garbage.
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I would have thought rsync was the logical answer.
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does rsync work over samba share? for some reason, I thought that only worked with ssh.