edit: maybe you'll need to launch it as root, like "sudo ./fastboot setvar bootmode main". If you don't trust my program enough to launch it as root you can change udev rules to be able to use fastboot as a normal user, but I can't give advice there. You can also compile it by yourself using "gcc -Wall protocol.c engine.c fastboot.c usb_linux.c util_linux.c -o fastboot"
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