Yes, I'm guessing its the files as well. I had Calibre download a Salon.com news feed, it was a huge file and I unplugged the usb, probably before it finished syncing.
The next time I booted up, I tried to open the news file and had the same horrible hang problem. I removed the bad file and problem solved. I would first try removing and re-adding the files and making sure they're fully synced. Second I would try just removing the files completely.
Sony's os can't handle bad files with the same finesse as Windows.
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