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Just a quick update (sorry it's taken so long): I have found that the metadata is not updated only for pdf's; epub files are fine. In order for the nook to recognize the metadata, it has to be set in the pdf properties itself. Calibre is not modifying the pdf properties inside the file. By using Acrobat Distiller, I can modify the pdf properties (author, title, etc.), and the nook will read this info properly. So if Calibre will ever be able to do this would be great.
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