For me, an ideal app would be something that I could take notes on, and then import those notes to my computer. Unfortunately, with the exception of the rather rudimentary notes, I haven't really found that app yet. The main note taker that I use is awesome notes, which at least lets me organize my notes. It also syncs with evernote and google docs, so I can get my notes to my computer in a round about way.
I also use evernote since that's supported on just about every platform there is. It works well enough. I prefer Yojimbo on the Mac, but Yojimbo for the iPad is readonly, which greatly reduces it's usefulness.
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