Hi Jon,
There's no equivalent of the "auto-generated external TOC" of the Sony; Mobi books have to have an "internal" TOC - ie one implemented using hyperlinks. As you know, for a single book you can use BD's "insert TOC" menu command for this, but for omnibus books you have to generate them by hand.
You then need to give the start of the TOC an HTML "bookmark" identifier (I use "toc") and specify that bookmark in the "Guide" section of the Mobi Creator settings in order to make the Mobi "Table of Contents" button take you to the right place. This is illustrated in my tutorial.
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