What Adoby said about file systems causing issues.
But...
It gets worse
you can end up with 2 copies of the SAME format
eg
Book_title.epub
book_title.EPUB
Windows can't deal with those and thinks you have only 1 file.
A clue that you DO have this issue is when you BACKUP (Copy) your library folder (in Windows) to a Blank folder and you get 'File exists' warnings.
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