Just a note to say that I am having a similar problem. All the books I've converted using ereader2html either have the funny characters when I use Calibre to convert them to ePub (or Mobi), or are missing pieces of punctuation altogether (em-dashes and quotes), depending on whether I tell it to use cp1252 or not.
Thanks to the previous poster for suggesting using Mobipocket Creator as an interim step. I'll give that a try. Reading the book with either the missing punctuation or the extra characters is a bit distracting.
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