Huh? All you need as documentation for mobigen.exe is shown on the commandline. What the content should be is documented on the Mobipocket website and is good enough. I have seen worse documentation.
I see no reason why mobigen.exe should not be able to generate DRMed books. Simply do not use the DRM options and it will not generate DRMed books. Same for the proprietary compression.
All the rest of the Mobipocket format are some attributes added to link and image tags. Really no rocket science. The .mobi format is just some finetuning.
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