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I know about both, but I had some problems with LF Aligner and it was easier to just use hunaligner than find where the error was coming from. For someone else it might be the program of choice, though.
As for Algona, it seems to use its own format, so for me it is not an option (as I can't open it on my eink readers). Epub/mobi is best in terms of portability, IMO.
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