While I haven't tried to use a net library with Moon+, I know that there is a way to automatically add books in a particular folder to the shelf and also a way to mass import books in a particular folder into Moon+ (go to option and Import Books).
This can be used to mass import the Calibre Companion library into Moon+ if it hasn't already been deleted. I have also used mass import on a folder in Dropbox.
Looking at the Calibre-sync faq it appears that it does support downloading multiple books.
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