@Nyn - yeah I don't consider that time unreasonable, given that you have mobi files so it is converting each one to ePub to count the words. I could possibly remove the need for the conversion with a little work, using similar code to what user_none has in his APNX file stuff. But this is one of those things that you only need to run once and it runs in the background, so a few seconds here or there shouldn't really make a huge difference. I'll put it on the todo list to do some proper testing at some point to see what difference it makes.
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