No, the default for all nook clients is what the user has selected (as well margins, line spacing and color).
Note that the 1.4.1 update didn't add this feature, it did however enable better enforcing of the CSS overrides to make sure that the user selections for styling would actually be used, and prevents 'ransom noting' among other things that I've seen with mixed styling (Night Mode not working). As you have already noted turning on the Publisher Defaults turns off the CSS overriding.
[Note to Mods - this would be better in one of the B&N forums (while he said Nook Color - this applies to all the Nook clients)]
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