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On second thought, I don't think metadata.db was the problem. I later got into the same situation, where I tried to get mht-files working at my DR1000. At some point the DR started refusing opening ePubs again. There was no metadata.db file in the directory. However, moving the ePub files to another directory, then having the DR index the card, made the DR open ePubs again. Moving the ePubs back to their old location did not bring back the problem, I could still open ePubs.
Maybe the entries for the ePubs in global.db got stale somehow?
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