The best way would be to raise an enhancement request that allowed the user to specify a mask for the name to be embedded in a file to allow it to be different to the information stored against that book entry in Calibre. This would allow you to keep the metadata in Calibre tidy. For some devices (e.g. Kindle) Calibre allows the Author Sort field to be sent in place of the Author field - so such an approach already has a level of precendent.
BTW: One advantage I have not mentioned of the Calibre2Opds approach is that although it does not show up at the title level in the Stanza library listing, you CAN see the series information if you drill down into the book info. It seems Stanza takes the Book Info from the catalog entry rather than from the book itself.
I must test to see if the same is true of the Book Title as then Calibre2Opds could be enhanced to do what you want during the Calibre2Opds catalog generation rather than having to change Calibre.
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