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If you want to recreate the index of books from the library folder do the following two things:
1) Copy all the folders to a new location and delete them from the existing library.
2) Click the arrow next to the add books button and select add from subfolders one book per folder and point it to the new location to which you copied the book folders
That should recreate the index. You will lose any metadata you created in the previous database however.
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