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I suppose the card could be having issues or it could be the firmware but I was using the card for something else before so it's been connected to both Windows and Linux boxes various times with no issues. Also, the Pocket Pro sees all my books and doesn't have any issues and the same with Ubuntu. Calibre is the only one not seeing all the books. Although it could still be an odd issue with the file system I find it less likely. I'll try Kovid's request for the output of ebook-device books and go from there. I'll also see if I can find a smaller card and reformat this card to see if it fixes the issues. One step at a time.
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