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I have almost all my ebooks in Calibre and sync the Calibre library with my laptop, home server, and work computer. Almost all the ebooks that aren't in Calibre are PDF references and those get synced between my laptop, home server and work machine.
I've already had a huge loss when my home server hosed the data partition beyond easy recovery and I lost about 2TB of media files. I didn't have it backed up since when I ripped them all 2TB was a lot of space, plus I have the originals, so I didn't lose anything critical. It's actually easier now since I don't have to re-rip most of it, I can just download it off the net. All the originals are in boxed in the garage.
The ebooks I back up since it may become difficult to recover or re-download some of them and they don't really take up much space.
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