That's up to you, but the softrooted nook shouldn't void the warranty. You haven't changed it physically, and it's not hard to restore the B&N released OS. You do have to install a microSD card in order to softroot the nook, though.
I hope that B&N will rework the nook interface, because it's not very good when you have hundreds of books, whether bought from B&N or sideloaded, and even though trook and mylibrary are better, none of them are adequate when you load your nook with the thousands of books it is capable of holding. I haven't played with a Kindle or any other e-Ink reader, but I suspect that's a weak point for them all.
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