It shouldn't leave a blank line between paragraphs unless there's an extra <br /> or </p> tag. For e.g. there wont be a blank line converting the following html
<p>para one</p>
<p>para two</p>
Adding per book settings to the OPF file seems like a good way to go. Open a bug report and I'll get around to it eventually. It's going to have to wait till I write a proper OPF parser, which in turn is probably not going to happen till after 0.4.0.
Also open a bug report for the <spine> and I'll add a --use-spine option.
And finally open a bug report for the declaration lists so I dont forget.
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