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Jon,
I agree that I have also seen EPUBs with end notes and they seemed to work well. What has troubled me is that fbReader and Stanza don't have a problem with my generated EPUB while the Sony does.
Would you be able to test and compare the two files that I attached? The nice thing about EPUB is that it can be easily edited in Sigil. If I am creating the problem by using some malformed HTML or CSS I haven't found it yet.
Thank you so much.
-Jon
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