The Kindle's native PDF capability is very limited, essentially like the PRS-600's full page view.
One option is to buy from Amazon using Kindle for PC, strip the DRM (unswindle.pyw is the easiest method) and then convert to ePub using Calibre. This is probably legal in the US for personal use of ebooks you bought. Note that this only works on AZW ebooks. The vast majority of Kindle ebooks are in the AZW format, but some are in the TOPAZ format.
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