Not had this problem, but have a few questions.
You speak of "shutdown routine", all I ever do is push the power slider and put mine in sleep mode. I have never actually turned mine all the way off. No need to IMHO since the battery life is insane!
I rarely let mine shut off automatically, but when I have it was without issues. If I were you I would simple do the on/off switch when I'm through reading.
Perhaps someone else has had your problem, and may have another solution...
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