I got my annotations matching up with the PDF Text a little better now. How I mark up my book is by putting brackets (like [ and ] ) around the text in the margins and making notes there, instead of using a highlighter.
In the python script, under class FreeHand, I have changed "xoff = -20" to be "xoff = -50" and it has been working out better for me.
Thanks again for the script! =)
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