Thanks cedricp. I just got this to work on my Ubuntu box. I changed the jarnal style from "red" to "black" in your script so that it doesn't stand out as much. The script works great. Some of the outer edges of my annotations are cut off a little but it is not a big deal because it can still be read.
I might try to update this script to get this working a little better if you don't mind.
Oh, also, for Ubuntu users, you will need to do a "sudo apt-get install python-pypdf" to get the proper python pdf libraries.
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