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I used your batch file and changed the batch file conversion directory from "My Desktop" to another drive on my computer. It works! I guess there might be some restriction of user access issue involved, but I am not sure about that.
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Did you use the new batch file and if so, did you run from both Desktop and some other place? There's no logical reason I can think of why it shouldn't run from Desktop -- did you get the same error as before or something else when you ran from there?
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Some files are converted with no problem, others are still with this annoying "unable to determine total number of pages" problem. I later find that those files that cannot be converted include: 1. pdf files with OCR text underneath the image, 2. pdf files with non-alphabet file names. Hope it can be dealt with in later releases.
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That happens when
pdftk cannot report how many pages there are in a document. You'll have to manually open each such document and find out how many pages there are and enter it. Can you link/post a sample file? I'll have to see how to detect the page count for those files -- they look like their information dictionary is corrupt or something.