First up, try not to panic as there has to be a logical explanation to it! I mean files / folders don't just magically disappear from a computer.
Have you tried running a search on your comp for some of the actual ebooks that were in your collection? I am thinking that perhaps the books have been moved by accident and are now sitting in a different location on your pc?
If you do hopefully find them, it might be a good idea to back them all up onto an extrnal drive or a cd / DVD because as you say it represents hours of work.
If anyone else has some suggestions, I hope they will help you out.
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