I've fixed a couple of memory leaks that should take care of 1.
For 2 and 3, try running calibre as
calibre-debug -g
from a terminal
4. the job output is stored to disk now, so buffering of disk IO will cause this.
5. Again calibre-debug -g
6. This will a dependency problem when running the binary installer (it has its own bundled libraries which probably conflict with the system ones preventing evince from running.
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