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Unless you are transferring large (read multi MB files such as audio) the timing between USB 1.1 and USB 2.0 is not a factor. Most e-books are small and ePub is compressed (ZIP) so their space requirements and transfer speeds are minimal. As suggested by cvkemp, large files are best transfered to a card and then the card inserted to the reader.
The time spent adding and removing files from the reader is very small as contrasted with the time spent reading. Do not let the USB 1.1 vs. 2.0 sway your choice.
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