There shouldn't be any difference between linux and windows. I tested it on linux, where it worked, but the code that runs is the same in both cases.
@Landrovan: One more test. Run the command
lrf2lrs on the generated LRF file. It will extract the images. Compare the images with the ones from the EPUB (are they identical?) I'm trying to determine if the loss of quality is being caused by your device trying to resize the images when given an EPUB.
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