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yeah, it really seems like that.
I remembered, on my laptop I had an older version (0.6.3) of Calibre, and with this one, I converted another html file - this one had no problems with the reflow.
So I took a very long look at the source html files. I am still not finished with all the html files, but in one case it seems like this:
In the proper ebook, a chapter ends with a <br/>. Then in the next line, the next chapter starts with <h2> for the chapter headline.
In the wrong ebook, this was not the case. I changed that (after I tried many other things before) and I think it now is correct. Also I noticed that sometimes the tag <br> was used and sometimes there was <br/>. Since the proper ebook also uses <br/> I changed all br tags to this version.
I still have another html -> epub with problems, but I am still working on it. I keep you updated.
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