Found out that anything in the 'Digital Editions' folder, even in sub-folders, will appear in ADE on the computer, so I have moved everything round again and used 'Digital Editions' as the root folder for all my ebooks and organised everything below that level.
Since I'll only be using epub files, ADE will be a good way of organising my collection. I will use Calibre as a utility to convert formats rather than organise.
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