Quote:
Originally Posted by kovidgoyal
Having specialised tools for every format quickly leads to insanity. Instead calibre takes the approach that you write your HTML once and it will do its best to render it as faithfully as possible in all the formats.
There is probably some CSS lurking around somewhere in your decompiled MOBI that's causing the margins. Try setting --override-css "p {margin-top: 0pt}"
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I must have missed the announcement that your thesis was accepted.
Congratulations!
Regards, Alex