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As a creator of e-books, I find mobi easier to work with: you don't have to stitch and paste huge files and then discover you got something in the wrong order. Much easier to edit, and you can do a partial and test the result to see if something works correctly, or if your flowing text actually displays right.
With ePub you have to just close your eyes, push the button, and hope. And wipe it and go work with another software to prep it, then try again.
I like both formats and use them, but mobi is my favorite for ease of use.
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