[brewt]

Attached are some things to demonstrate footnotes/endnotes and hanging indents in both mobi & epub.
Epub & mobi made from Calibre
prc made from mobicreator
zipped source html made with nothing short of Pure Unadulterated Evil.
Epub made with Indesign.

Making those things work depend on what you use to write the source file (Go Evil!), the creator software and the reading software you use to look at it. ZuluReader, for example, doesn't do the hyperlinking, and still seems to be stripping out most formatting (at least, the ones I know how to use).
Seems to read ok in ADE and Mobi and Calibre readers.

The Indesign-created file is problematic. The hyperlinks created in Word are stripped. Not to mention some of the cool style tricks (like forcing a page at the chapter) and lines go away, etc. And I haven't sorted out hyperlinking in IDcs4v603 yet, seems hard. Fonts are embedded ok.

-bjc