Ok so here is the game plan then. After I indexed the PDF it didn't give me a TOC until I exported it to HTML. So after I exported it to HTML I saw the TOC. So my next movie is to convert that HTML to PDF (very easy on mac). After that I open my PDF back in adobe and link each line of the TOC (meaning the chapters ONE, TWO,etc) to it's corresponding page/chapter. Then once that's all set I save the modified PDF and use it in calibre. This should automatically detect the TOC in the front page and make waypoints for each chapter. Right? That's the only way I know to make a functioning TOC in adobe. I'll try it. Hope it works!! I'll keep this thread posted.
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