The GUI is designed around the concept of files, it doesn't handle ebooks as folders which makes uncompressed OEB output a little too painful to implement in the GUI. As for the sysctl, it's a path issue, what does
ls -l `which sysctl` give you?
Can you opena ticket and attach a lit file that shows this behavior?
@Colavaere: you're bugs will be fixed in the next beta
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