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Yes, you can manage your books in Calibre.
Open Calibre and in the top left corner, click on 'Add Books'. A window opens and you browse to your ebook store files. The sony software put the file in my documents / my books / ebook library. The book files have names like cbuscecc1000bxxx. Highlight the files and click open. Calibre will copy the files and create folders for each book or author. You can edit the metadata and create tags which will help you sort the books. The original sony files will remain separate.
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