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Hit the same ToC bug this week on a daily PDF for reMarkable and Kindle. Two fixes: the go-to links need an indirect reference to the page object, not a page index (pypdf's Link helper quietly writes an index and both devices ignore it), and a PDF outline matters more than in-page links, because Kindle and reMarkable build their contents view from the outline. On full text vs links: I put the editor's own few sentences per story inside the PDF and skip the external links. It sidesteps the copyright worry and reads offline.
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