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If it helps, a Sigil output plugin could easily be created to save any epub to Windows without any crlfs in it.
But be aware if you use git for version control that by default git auto handles crlf conversion on Windows commits and checkouts so you may be in for a surprise if using the default git for revision control.
And fwiw I think there is a Linux subsystem on Windows that now supports gui apps that would of course not need or use crlf.
Hope something here helps.
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